Package: IsoFishR 1.99.0.9000

IsoFishR: Data Reduction and Analysis of Laser-Ablation Strontium Isotope Profiles

Reduces 87Sr/86Sr isotope ratios measured by laser-ablation multi-collector ICP-MS (blank correction, Rb interference and mass bias correction, outlier rejection, smoothing) and supports profile analysis (trimming, regions, changepoints). Version 2 development; the original application is preserved under the v1.1 tag.

Authors:Malte Willmes [aut, cre], Katherine Ransom [aut], James Hobbs [aut]

IsoFishR_1.99.0.9000.tar.gz
IsoFishR_1.99.0.9000.zip(r-4.7-any)IsoFishR_1.99.0.9000.zip(r-4.6-any)IsoFishR_1.99.0.9000.zip(r-4.5-any)
IsoFishR_1.99.0.9000.tgz(r-4.6-any)IsoFishR_1.99.0.9000.tgz(r-4.5-any)
IsoFishR_1.99.0.9000.tar.gz(r-4.7-any)IsoFishR_1.99.0.9000.tar.gz(r-4.6-any)
IsoFishR_1.99.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
IsoFishR/json (API)

# Install 'IsoFishR' in R:
install.packages('IsoFishR', repos = c('https://maltewillmes.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/maltewillmes/isofishr/issues

On CRAN:

Conda:

fishisotopelaserotolithsshiny

3.04 score 11 stars 62 exports 86 dependencies

Last updated from:3e2ad0a4c4 (on v2-dev). Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK239
source / vignettesOK419
linux-releaseOK279
macos-releaseOK241
macos-oldrelOK188
windows-develOK204
windows-releaseOK199
windows-oldrelOK214
wasm-releaseOK172

Exports:add_runfilesapply_editsapply_reference_suggestioncalibration_modelcheck_settingsclose_projectcorrect_ratioscreate_example_projectcreate_projectdefault_reference_materialsdefault_settingsdelete_import_presetEXPORT_FILESexport_projectexport_reportfind_changepointsfind_runfilesget_import_presetimport_preset_dirimport_v1_settingsintegrate_cycleslist_import_presetsmerge_settingsopen_projectprofile_plotproject_baselinesproject_dataproject_profilesproject_regionsproject_runsproject_settings_tableread_acquisition_timesread_logread_runfilesread_settingsreduce_runsreference_material_plotreference_material_resultsreject_outliersremove_reference_materialremove_samplesreport_markdownrun_appsample_settingssave_import_presetset_reference_materialset_regionsset_run_typeset_sample_settingsset_sessionsmooth_masmooth_splinesuggest_reference_runssummarise_blanksummarise_project_changepointssummarise_project_regionssummarise_project_samplessummarise_reference_materialssummarise_regionsupdate_project_settingsupdate_samplewrite_settings

Dependencies:askpassbase64encbitbit64bslibcachemchangepointclicliprcommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyrDTevaluatefarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMatrixmemoisemgcvmimenlmeopensslotelpillarpkgconfigplotlyprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppreadrrlangrmarkdownS7sassscalesshinysourcetoolsstringistringrsystibbletidyrtidyselecttinytextzdbutf8vctrsviridisLitevroomwithrxfunxtableyamlzoo

Readme and manuals

Help Manual

Help pageTopics
Add runfiles to a projectadd_runfiles
Apply trims and profile directionapply_edits
Reference material correction modelcalibration_model
Validate settingscheck_settings
Rb interference and mass bias correctioncorrect_ratios
Create an example projectcreate_example_project
Default reference materialsdefault_reference_materials
Default project settingsdefault_settings
Export project summariesEXPORT_FILES export_project
Record of an exportexport_report
Detect changepoints in a profilefind_changepoints
Find runfiles in a folderfind_runfiles
Instrument import presetsdelete_import_preset get_import_preset import_presets import_preset_dir list_import_presets save_import_preset
Convert a v1 project settings fileimport_v1_settings
Average consecutive cyclesintegrate_cycles
Combine settings with overridesmerge_settings
Interactive profile plotprofile_plot
IsoFishR projectsclose_project create_project open_project project
Baseline runs of a projectproject_baselines
Reduced data for project samplesproject_data
Full profiles of all samplesproject_profiles
Region statistics for project samplesproject_regions
Runs in acquisition orderproject_runs
Project summariesproject_settings_table project_summaries summarise_project_changepoints summarise_project_regions summarise_project_samples
Read the acquisition time of runfilesread_acquisition_times
Read the project session logread_log
Read laser-ablation runfilesread_runfiles
Reduce laser-ablation Sr isotope datareduce_runs
Reference material plotreference_material_plot
Reference material resultsreference_material_results summarise_reference_materials
Reject outliers in 87Sr/86Srreject_outliers
Remove samples from a projectremove_samples
Export record as Markdownreport_markdown
Run the IsoFishR apprun_app
Reference materials of a projectremove_reference_material set_reference_material
Set the regions of a sampleset_regions
Set the type of runsset_run_type
Per-sample reduction settingssample_settings set_sample_settings
Assign runs to an analytical sessionset_session
Read and write project settingsread_settings settings_io write_settings
Moving average of 87Sr/86Srsmooth_ma
Adaptive spline fit of 87Sr/86Srsmooth_spline
Suggest reference material runs from their namesapply_reference_suggestion suggest_reference_runs
Mean blank voltages per samplesummarise_blank
Summarise regions of a profilesummarise_regions
Change project settingsupdate_project_settings
Change a sample's status, comment or editsupdate_sample