{
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  "Package": "IsoFishR",
  "Title": "Data Reduction and Analysis of Laser-Ablation Strontium Isotope\nProfiles",
  "Version": "1.99.0.9000",
  "Authors@R": "c(\nperson(\"Malte\", \"Willmes\", , \"malte.willmes@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Katherine\", \"Ransom\", role = \"aut\"),\nperson(\"James\", \"Hobbs\", role = \"aut\")\n)",
  "Description": "Reduces 87Sr/86Sr isotope ratios measured by\nlaser-ablation multi-collector ICP-MS (blank correction, Rb\ninterference and mass bias correction, outlier rejection,\nsmoothing) and supports profile analysis (trimming, regions,\nchangepoints). Version 2 development; the original application\nis preserved under the v1.1 tag.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/MalteWillmes/IsoFishR",
  "BugReports": "https://github.com/MalteWillmes/IsoFishR/issues",
  "Config/testthat/edition": "3",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libssl-dev\nlibx11-dev zlib1g-dev",
  "Repository": "https://maltewillmes.r-universe.dev",
  "Date/Publication": "2026-10-20 13:48:53 UTC",
  "RemoteUrl": "https://github.com/MalteWillmes/IsoFishR",
  "RemoteRef": "v2-dev",
  "RemoteSha": "3e2ad0a4c40a8dc872c38dcdab3e2c14a72a15d6",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
  },
  "Author": "Malte Willmes [aut, cre],\nKatherine Ransom [aut],\nJames Hobbs [aut]",
  "Maintainer": "Malte Willmes <malte.willmes@gmail.com>",
  "_user": "maltewillmes",
  "_type": "src",
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  "_expires": "2027-01-28T15:28:08.000Z",
  "_created": "2026-10-20T15:22:42.000Z",
  "_published": "2026-10-20T15:28:11.066Z",
  "_upstream": "https://github.com/MalteWillmes/IsoFishR",
  "_status": "success",
  "_maintainer": {
    "name": "Malte Willmes",
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    "description": "Researcher in fish and wildlife isotope ecology",
    "uuid": 5906008
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    "message": "Workspace: show the moving average and the spline separately\n\n\"Smoothed\" is split into \"Moving average\" and \"Spline\" checkboxes; each\nswitches its line in the browser without redrawing the plot. The older\n\"smooth\" option of profile_plot() still shows both.\n\nCo-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>\n",
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      "n": 22
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    "isotope",
    "laser",
    "otoliths",
    "shiny"
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    "apply_edits",
    "apply_reference_suggestion",
    "calibration_model",
    "check_settings",
    "close_project",
    "correct_ratios",
    "create_example_project",
    "create_project",
    "default_reference_materials",
    "default_settings",
    "delete_import_preset",
    "EXPORT_FILES",
    "export_project",
    "export_report",
    "find_changepoints",
    "find_runfiles",
    "get_import_preset",
    "import_preset_dir",
    "import_v1_settings",
    "integrate_cycles",
    "list_import_presets",
    "merge_settings",
    "open_project",
    "profile_plot",
    "project_baselines",
    "project_data",
    "project_profiles",
    "project_regions",
    "project_runs",
    "project_settings_table",
    "read_acquisition_times",
    "read_log",
    "read_runfiles",
    "read_settings",
    "reduce_runs",
    "reference_material_plot",
    "reference_material_results",
    "reject_outliers",
    "remove_reference_material",
    "remove_samples",
    "report_markdown",
    "run_app",
    "sample_settings",
    "save_import_preset",
    "set_reference_material",
    "set_regions",
    "set_run_type",
    "set_sample_settings",
    "set_session",
    "smooth_ma",
    "smooth_spline",
    "suggest_reference_runs",
    "summarise_blank",
    "summarise_project_changepoints",
    "summarise_project_regions",
    "summarise_project_samples",
    "summarise_reference_materials",
    "summarise_regions",
    "update_project_settings",
    "update_sample",
    "write_settings"
  ],
  "_help": [
    {
      "page": "add_runfiles",
      "title": "Add runfiles to a project",
      "topics": [
        "add_runfiles"
      ]
    },
    {
      "page": "apply_edits",
      "title": "Apply trims and profile direction",
      "topics": [
        "apply_edits"
      ]
    },
    {
      "page": "calibration_model",
      "title": "Reference material correction model",
      "topics": [
        "calibration_model"
      ]
    },
    {
      "page": "check_settings",
      "title": "Validate settings",
      "topics": [
        "check_settings"
      ]
    },
    {
      "page": "correct_ratios",
      "title": "Rb interference and mass bias correction",
      "topics": [
        "correct_ratios"
      ]
    },
    {
      "page": "create_example_project",
      "title": "Create an example project",
      "topics": [
        "create_example_project"
      ]
    },
    {
      "page": "default_reference_materials",
      "title": "Default reference materials",
      "topics": [
        "default_reference_materials"
      ]
    },
    {
      "page": "default_settings",
      "title": "Default project settings",
      "topics": [
        "default_settings"
      ]
    },
    {
      "page": "export_project",
      "title": "Export project summaries",
      "topics": [
        "EXPORT_FILES",
        "export_project"
      ]
    },
    {
      "page": "export_report",
      "title": "Record of an export",
      "topics": [
        "export_report"
      ]
    },
    {
      "page": "find_changepoints",
      "title": "Detect changepoints in a profile",
      "topics": [
        "find_changepoints"
      ]
    },
    {
      "page": "find_runfiles",
      "title": "Find runfiles in a folder",
      "topics": [
        "find_runfiles"
      ]
    },
    {
      "page": "import_presets",
      "title": "Instrument import presets",
      "topics": [
        "delete_import_preset",
        "get_import_preset",
        "import_presets",
        "import_preset_dir",
        "list_import_presets",
        "save_import_preset"
      ]
    },
    {
      "page": "import_v1_settings",
      "title": "Convert a v1 project settings file",
      "topics": [
        "import_v1_settings"
      ]
    },
    {
      "page": "integrate_cycles",
      "title": "Average consecutive cycles",
      "topics": [
        "integrate_cycles"
      ]
    },
    {
      "page": "merge_settings",
      "title": "Combine settings with overrides",
      "topics": [
        "merge_settings"
      ]
    },
    {
      "page": "profile_plot",
      "title": "Interactive profile plot",
      "topics": [
        "profile_plot"
      ]
    },
    {
      "page": "project",
      "title": "IsoFishR projects",
      "topics": [
        "close_project",
        "create_project",
        "open_project",
        "project"
      ]
    },
    {
      "page": "project_baselines",
      "title": "Baseline runs of a project",
      "topics": [
        "project_baselines"
      ]
    },
    {
      "page": "project_data",
      "title": "Reduced data for project samples",
      "topics": [
        "project_data"
      ]
    },
    {
      "page": "project_profiles",
      "title": "Full profiles of all samples",
      "topics": [
        "project_profiles"
      ]
    },
    {
      "page": "project_regions",
      "title": "Region statistics for project samples",
      "topics": [
        "project_regions"
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    },
    {
      "page": "project_runs",
      "title": "Runs in acquisition order",
      "topics": [
        "project_runs"
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      "topics": [
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        "project_summaries",
        "summarise_project_changepoints",
        "summarise_project_regions",
        "summarise_project_samples"
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      "title": "Read the acquisition time of runfiles",
      "topics": [
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    },
    {
      "page": "read_log",
      "title": "Read the project session log",
      "topics": [
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      ]
    },
    {
      "page": "read_runfiles",
      "title": "Read laser-ablation runfiles",
      "topics": [
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      ]
    },
    {
      "page": "reduce_runs",
      "title": "Reduce laser-ablation Sr isotope data",
      "topics": [
        "reduce_runs"
      ]
    },
    {
      "page": "reference_material_plot",
      "title": "Reference material plot",
      "topics": [
        "reference_material_plot"
      ]
    },
    {
      "page": "reference_material_results",
      "title": "Reference material results",
      "topics": [
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        "summarise_reference_materials"
      ]
    },
    {
      "page": "reject_outliers",
      "title": "Reject outliers in 87Sr/86Sr",
      "topics": [
        "reject_outliers"
      ]
    },
    {
      "page": "remove_samples",
      "title": "Remove samples from a project",
      "topics": [
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    },
    {
      "page": "report_markdown",
      "title": "Export record as Markdown",
      "topics": [
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      ]
    },
    {
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      "title": "Run the IsoFishR app",
      "topics": [
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      ]
    },
    {
      "page": "set_reference_material",
      "title": "Reference materials of a project",
      "topics": [
        "remove_reference_material",
        "set_reference_material"
      ]
    },
    {
      "page": "set_regions",
      "title": "Set the regions of a sample",
      "topics": [
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      ]
    },
    {
      "page": "set_run_type",
      "title": "Set the type of runs",
      "topics": [
        "set_run_type"
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    },
    {
      "page": "set_sample_settings",
      "title": "Per-sample reduction settings",
      "topics": [
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        "set_sample_settings"
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    },
    {
      "page": "set_session",
      "title": "Assign runs to an analytical session",
      "topics": [
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      ]
    },
    {
      "page": "settings_io",
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      "topics": [
        "read_settings",
        "settings_io",
        "write_settings"
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    },
    {
      "page": "smooth_ma",
      "title": "Moving average of 87Sr/86Sr",
      "topics": [
        "smooth_ma"
      ]
    },
    {
      "page": "smooth_spline",
      "title": "Adaptive spline fit of 87Sr/86Sr",
      "topics": [
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    },
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      "page": "suggest_reference_runs",
      "title": "Suggest reference material runs from their names",
      "topics": [
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        "suggest_reference_runs"
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    },
    {
      "page": "summarise_blank",
      "title": "Mean blank voltages per sample",
      "topics": [
        "summarise_blank"
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    },
    {
      "page": "summarise_regions",
      "title": "Summarise regions of a profile",
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    },
    {
      "page": "update_project_settings",
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    {
      "page": "update_sample",
      "title": "Change a sample's status, comment or edits",
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